MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity
Tesei Anna; Diosdi Akos; Weindorfer Claudia; De Wever Olivier; Blondeel Phillip; Sys Gwen; Kunz-Schughart Leoni A.; Takayama Shuichi; Mestdagh Pieter; Goossens Vera; Ahmed Tasdiq; Dedeyne Sándor; Peirsman Arne; Dolznig Helmut; Oliveira Maria José; Heino Jyrki; Castellani Gastone; Dangles-Marie Virginie; Blondeel Eva; Michlíková Soña; Robbins Stephen M.; Gespach Christian; Siljamaki Elina; Yigit Nurten; Rahn Jennifer; Carragher Neil; De Tullio Pascal; Boterberg Tom; Pampaloni Francesco; Zanoni Michele; Anckaert Jasper; Castro Flavia; Vandesompele Jo; Wagemans Glenn; Hendrix An; Fischer Suzanne; De Vlieghere Elly; Pinheiro Cláudio; Piccinini Filippo; Maes Sebastiaan; Dawson John; Zablowsky Nina; Audenaert Dominique; Dmitriev Ruslan I; Mangodt Christophe; Steigemann Patrick; Tulkens Joeri; Van Waeyenberge Michiel; Depypere Herman; Horvath Peter; Buzas Krisztina
MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity
Tesei Anna
Diosdi Akos
Weindorfer Claudia
De Wever Olivier
Blondeel Phillip
Sys Gwen
Kunz-Schughart Leoni A.
Takayama Shuichi
Mestdagh Pieter
Goossens Vera
Ahmed Tasdiq
Dedeyne Sándor
Peirsman Arne
Dolznig Helmut
Oliveira Maria José
Heino Jyrki
Castellani Gastone
Dangles-Marie Virginie
Blondeel Eva
Michlíková Soña
Robbins Stephen M.
Gespach Christian
Siljamaki Elina
Yigit Nurten
Rahn Jennifer
Carragher Neil
De Tullio Pascal
Boterberg Tom
Pampaloni Francesco
Zanoni Michele
Anckaert Jasper
Castro Flavia
Vandesompele Jo
Wagemans Glenn
Hendrix An
Fischer Suzanne
De Vlieghere Elly
Pinheiro Cláudio
Piccinini Filippo
Maes Sebastiaan
Dawson John
Zablowsky Nina
Audenaert Dominique
Dmitriev Ruslan I
Mangodt Christophe
Steigemann Patrick
Tulkens Joeri
Van Waeyenberge Michiel
Depypere Herman
Horvath Peter
Buzas Krisztina
NATURE PORTFOLIO
Julkaisun pysyvä osoite on:
https://urn.fi/URN:NBN:fi-fe2022012710703
https://urn.fi/URN:NBN:fi-fe2022012710703
Tiivistelmä
A knowledgebase developed for increased the transparency of reporting in spheroid research.Spheroids are three-dimensional cellular models with widespread basic and translational application across academia and industry. However, methodological transparency and guidelines for spheroid research have not yet been established. The MISpheroID Consortium developed a crowdsourcing knowledgebase that assembles the experimental parameters of 3,058 published spheroid-related experiments. Interrogation of this knowledgebase identified heterogeneity in the methodological setup of spheroids. Empirical evaluation and interlaboratory validation of selected variations in spheroid methodology revealed diverse impacts on spheroid metrics. To facilitate interpretation, stimulate transparency and increase awareness, the Consortium defines the MISpheroID string, a minimum set of experimental parameters required to report spheroid research. Thus, MISpheroID combines a valuable resource and a tool for three-dimensional cellular models to mine experimental parameters and to improve reproducibility.
Kokoelmat
- Rinnakkaistallenteet [19207]