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Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure

López-Labrador F. Xavier; Brown Julianne R.; Fischer Nicole; Harvala Heli; Van Boheemen Sander; Cinek Ondrej; Sayiner Arzu; Madsen Tina Vasehus; Auvinen Eeva; Kufner Verena; Huber Michael; Rodriguez Christophe; Jonges Marcel; Hönemann Mario; Susi Petri; Sousa Hugo; Klapper Paul E.; Pérez-Cataluňa Alba; Hernandez Marta; Molenkamp Richard; van der Hoek Lia; Schuurman Rob; Couto Natacha; Leuzinger Karoline; Simmonds Peter; Beer Martin; Höper Dirk; Kamminga Sergio; Feltkamp Mariet C.W.; Rodríguez-Díaz Jesús; Keyaerts Els; Nielsen Xiaohui Chen; Puchhammer-Stöckl Elisabeth; Kroes Aloys C.M.; Buesa Javier; Breuer Judy; Claas Eric C.J.; de Vries Jutte J.C.; ESCV Network on Next-Generation Sequencing

Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure

López-Labrador F. Xavier
Brown Julianne R.
Fischer Nicole
Harvala Heli
Van Boheemen Sander
Cinek Ondrej
Sayiner Arzu
Madsen Tina Vasehus
Auvinen Eeva
Kufner Verena
Huber Michael
Rodriguez Christophe
Jonges Marcel
Hönemann Mario
Susi Petri
Sousa Hugo
Klapper Paul E.
Pérez-Cataluňa Alba
Hernandez Marta
Molenkamp Richard
van der Hoek Lia
Schuurman Rob
Couto Natacha
Leuzinger Karoline
Simmonds Peter
Beer Martin
Höper Dirk
Kamminga Sergio
Feltkamp Mariet C.W.
Rodríguez-Díaz Jesús
Keyaerts Els
Nielsen Xiaohui Chen
Puchhammer-Stöckl Elisabeth
Kroes Aloys C.M.
Buesa Javier
Breuer Judy
Claas Eric C.J.
de Vries Jutte J.C.
ESCV Network on Next-Generation Sequencing
Katso/Avaa
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Elsevier
doi:10.1016/j.jcv.2020.104691
URI
https://www.sciencedirect.com/science/article/pii/S1386653220304339?via%3Dihub
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Julkaisun pysyvä osoite on:
https://urn.fi/URN:NBN:fi-fe2021042820793
Tiivistelmä
Metagenomic high-throughput sequencing (mHTS) is a hypothesis-free, universal pathogen detection technique for determination of the DNA/RNA sequences in a variety of sample types and infectious syndromes. mHTS is still in its early stages of translating into clinical application. To support the development, implementation and standardization of mHTS procedures for virus diagnostics, the European Society for Clinical Virology (ESCV) Network on Next-Generation Sequencing (ENNGS) has been established. The aim of ENNGS is to bring together professionals involved in mHTS for viral diagnostics to share methodologies and experiences, and to develop application recommendations. This manuscript aims to provide practical recommendations for the wet lab procedures necessary for implementation of mHTS for virus diagnostics and to give recommendations for development and validation of laboratory methods, including mHTS quality assurance, control and quality assessment protocols.
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