Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization

dc.contributor.authorJussi Toivonen
dc.contributor.authorIleana Montoya Perez
dc.contributor.authorParisa Movahedi
dc.contributor.authorHarri Merisaari
dc.contributor.authorMarko Pesola
dc.contributor.authorPekka Taimen
dc.contributor.authorPeter J. Boström
dc.contributor.authorJonne Pohjankukka
dc.contributor.authorAida Kiviniemi
dc.contributor.authorTapio Pahikkala
dc.contributor.authorHannu J. Aronen
dc.contributor.authorIvan Jambor
dc.contributor.organizationfi=biolääketieteen laitos|en=Institute of Biomedicine|
dc.contributor.organizationfi=kirurgia|en=Surgery|
dc.contributor.organizationfi=kuvantaminen ja kliininen diagnostiikka|en=Imaging and Clinical Diagnostics|
dc.contributor.organizationfi=tietojenkäsittelytiede|en=Computer Science|
dc.contributor.organizationfi=tyks, vsshp|en=tyks, varha|
dc.contributor.organization-code1.2.246.10.2458963.20.23479734818
dc.contributor.organization-code1.2.246.10.2458963.20.69079168212
dc.contributor.organization-code1.2.246.10.2458963.20.77952289591
dc.contributor.organization-code1.2.246.10.2458963.20.97295082107
dc.contributor.organization-code2606803
dc.contributor.organization-code2607100
dc.contributor.organization-code2607303
dc.converis.publication-id42073491
dc.converis.urlhttps://research.utu.fi/converis/portal/Publication/42073491
dc.date.accessioned2022-10-28T14:39:23Z
dc.date.available2022-10-28T14:39:23Z
dc.description.abstract<h3>Purpose</h3> <a></a><p>To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T<sub>2</sub>-weighted imaging (T<sub>2</sub>w), diffusion weighted imaging (DWI) acquired using high b values, and T<sub>2</sub>-mapping (T<sub>2</sub>).</p> <div><a title="Methods"></a> <h3>Methods</h3> <a></a><p>T<sub>2</sub>w, DWI (12 b values, 0–2000 s/mm<sup>2</sup>), and T<sub>2</sub> data sets of 62 patients with histologically confirmed PCa were acquired at 3T using surface array coils. The DWI data sets were post-processed using monoexponential and kurtosis models, while T<sub>2</sub>w was standardized to a common scale. Local statistics and 8 different radiomics/texture descriptors were utilized at different configurations to extract a total of 7105 unique per-tumor features. Regularized logistic regression with implicit feature selection and leave pair out cross validation was used to discriminate tumors with 3+3 vs >3+3 GS.</p> </div> <div><a title="Results"></a> <h3>Results</h3> <a></a><p>In total, 100 PCa lesions were analysed, of those 20 and 80 had GS of 3+3 and >3+3, respectively. The best model performance was obtained by selecting the top 1% features of T<sub>2</sub>w, ADC<sub>m</sub> and K with ROC AUC of 0.88 (95% CI of 0.82–0.95). Features from T<sub>2</sub> mapping provided little added value. The most useful texture features were based on the gray-level co-occurrence matrix, Gabor transform, and Zernike moments.</p> </div> <div><a title="Conclusion"></a> <h3>Conclusion</h3> <a></a><p>Texture feature analysis of DWI, post-processed using monoexponential and kurtosis models, and T<sub>2</sub>w demonstrated good classification performance for GS of PCa. In multisequence setting, the optimal radiomics based texture extraction methods and parameters differed between different image types.</p> </div>
dc.identifier.eissn1932-6203
dc.identifier.jour-issn1932-6203
dc.identifier.olddbid189513
dc.identifier.oldhandle10024/172607
dc.identifier.urihttps://www.utupub.fi/handle/11111/55074
dc.identifier.urnURN:NBN:fi-fe2021042827450
dc.language.isoen
dc.okm.affiliatedauthorToivonen, Jussi
dc.okm.affiliatedauthorMontoya Perez, Ileana
dc.okm.affiliatedauthorMovahedi, Parisa
dc.okm.affiliatedauthorMerisaari, Harri
dc.okm.affiliatedauthorPesola, Marko
dc.okm.affiliatedauthorTaimen, Pekka
dc.okm.affiliatedauthorBoström, Peter
dc.okm.affiliatedauthorPohjankukka, Jonne
dc.okm.affiliatedauthorSteiner, Aida
dc.okm.affiliatedauthorPahikkala, Tapio
dc.okm.affiliatedauthorAronen, Hannu
dc.okm.affiliatedauthorJambor, Ivan
dc.okm.affiliatedauthorDataimport, tyks, vsshp
dc.okm.discipline113 Computer and information sciencesen_GB
dc.okm.discipline3126 Surgery, anesthesiology, intensive care, radiologyen_GB
dc.okm.discipline113 Tietojenkäsittely ja informaatiotieteetfi_FI
dc.okm.discipline3126 Kirurgia, anestesiologia, tehohoito, radiologiafi_FI
dc.okm.internationalcopublicationinternational co-publication
dc.okm.internationalityInternational publication
dc.okm.typeA1 ScientificArticle
dc.publisherPublic Library of Science
dc.publisher.countryUnited Statesen_GB
dc.publisher.countryYhdysvallat (USA)fi_FI
dc.publisher.country-codeUS
dc.relation.doi10.1371/journal.pone.0217702
dc.relation.ispartofjournalPLoS ONE
dc.relation.issue7
dc.relation.volume14
dc.source.identifierhttps://www.utupub.fi/handle/10024/172607
dc.titleRadiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
dc.year.issued2019

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