Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
| dc.contributor.author | Jussi Toivonen | |
| dc.contributor.author | Ileana Montoya Perez | |
| dc.contributor.author | Parisa Movahedi | |
| dc.contributor.author | Harri Merisaari | |
| dc.contributor.author | Marko Pesola | |
| dc.contributor.author | Pekka Taimen | |
| dc.contributor.author | Peter J. Boström | |
| dc.contributor.author | Jonne Pohjankukka | |
| dc.contributor.author | Aida Kiviniemi | |
| dc.contributor.author | Tapio Pahikkala | |
| dc.contributor.author | Hannu J. Aronen | |
| dc.contributor.author | Ivan Jambor | |
| dc.contributor.organization | fi=biolääketieteen laitos|en=Institute of Biomedicine| | |
| dc.contributor.organization | fi=kirurgia|en=Surgery| | |
| dc.contributor.organization | fi=kuvantaminen ja kliininen diagnostiikka|en=Imaging and Clinical Diagnostics| | |
| dc.contributor.organization | fi=tietojenkäsittelytiede|en=Computer Science| | |
| dc.contributor.organization | fi=tyks, vsshp|en=tyks, varha| | |
| dc.contributor.organization-code | 1.2.246.10.2458963.20.23479734818 | |
| dc.contributor.organization-code | 1.2.246.10.2458963.20.69079168212 | |
| dc.contributor.organization-code | 1.2.246.10.2458963.20.77952289591 | |
| dc.contributor.organization-code | 1.2.246.10.2458963.20.97295082107 | |
| dc.contributor.organization-code | 2606803 | |
| dc.contributor.organization-code | 2607100 | |
| dc.contributor.organization-code | 2607303 | |
| dc.converis.publication-id | 42073491 | |
| dc.converis.url | https://research.utu.fi/converis/portal/Publication/42073491 | |
| dc.date.accessioned | 2022-10-28T14:39:23Z | |
| dc.date.available | 2022-10-28T14:39:23Z | |
| dc.description.abstract | <h3>Purpose</h3> <a></a><p>To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T<sub>2</sub>-weighted imaging (T<sub>2</sub>w), diffusion weighted imaging (DWI) acquired using high b values, and T<sub>2</sub>-mapping (T<sub>2</sub>).</p> <div><a title="Methods"></a> <h3>Methods</h3> <a></a><p>T<sub>2</sub>w, DWI (12 b values, 0–2000 s/mm<sup>2</sup>), and T<sub>2</sub> data sets of 62 patients with histologically confirmed PCa were acquired at 3T using surface array coils. The DWI data sets were post-processed using monoexponential and kurtosis models, while T<sub>2</sub>w was standardized to a common scale. Local statistics and 8 different radiomics/texture descriptors were utilized at different configurations to extract a total of 7105 unique per-tumor features. Regularized logistic regression with implicit feature selection and leave pair out cross validation was used to discriminate tumors with 3+3 vs >3+3 GS.</p> </div> <div><a title="Results"></a> <h3>Results</h3> <a></a><p>In total, 100 PCa lesions were analysed, of those 20 and 80 had GS of 3+3 and >3+3, respectively. The best model performance was obtained by selecting the top 1% features of T<sub>2</sub>w, ADC<sub>m</sub> and K with ROC AUC of 0.88 (95% CI of 0.82–0.95). Features from T<sub>2</sub> mapping provided little added value. The most useful texture features were based on the gray-level co-occurrence matrix, Gabor transform, and Zernike moments.</p> </div> <div><a title="Conclusion"></a> <h3>Conclusion</h3> <a></a><p>Texture feature analysis of DWI, post-processed using monoexponential and kurtosis models, and T<sub>2</sub>w demonstrated good classification performance for GS of PCa. In multisequence setting, the optimal radiomics based texture extraction methods and parameters differed between different image types.</p> </div> | |
| dc.identifier.eissn | 1932-6203 | |
| dc.identifier.jour-issn | 1932-6203 | |
| dc.identifier.olddbid | 189513 | |
| dc.identifier.oldhandle | 10024/172607 | |
| dc.identifier.uri | https://www.utupub.fi/handle/11111/55074 | |
| dc.identifier.urn | URN:NBN:fi-fe2021042827450 | |
| dc.language.iso | en | |
| dc.okm.affiliatedauthor | Toivonen, Jussi | |
| dc.okm.affiliatedauthor | Montoya Perez, Ileana | |
| dc.okm.affiliatedauthor | Movahedi, Parisa | |
| dc.okm.affiliatedauthor | Merisaari, Harri | |
| dc.okm.affiliatedauthor | Pesola, Marko | |
| dc.okm.affiliatedauthor | Taimen, Pekka | |
| dc.okm.affiliatedauthor | Boström, Peter | |
| dc.okm.affiliatedauthor | Pohjankukka, Jonne | |
| dc.okm.affiliatedauthor | Steiner, Aida | |
| dc.okm.affiliatedauthor | Pahikkala, Tapio | |
| dc.okm.affiliatedauthor | Aronen, Hannu | |
| dc.okm.affiliatedauthor | Jambor, Ivan | |
| dc.okm.affiliatedauthor | Dataimport, tyks, vsshp | |
| dc.okm.discipline | 113 Computer and information sciences | en_GB |
| dc.okm.discipline | 3126 Surgery, anesthesiology, intensive care, radiology | en_GB |
| dc.okm.discipline | 113 Tietojenkäsittely ja informaatiotieteet | fi_FI |
| dc.okm.discipline | 3126 Kirurgia, anestesiologia, tehohoito, radiologia | fi_FI |
| dc.okm.internationalcopublication | international co-publication | |
| dc.okm.internationality | International publication | |
| dc.okm.type | A1 ScientificArticle | |
| dc.publisher | Public Library of Science | |
| dc.publisher.country | United States | en_GB |
| dc.publisher.country | Yhdysvallat (USA) | fi_FI |
| dc.publisher.country-code | US | |
| dc.relation.doi | 10.1371/journal.pone.0217702 | |
| dc.relation.ispartofjournal | PLoS ONE | |
| dc.relation.issue | 7 | |
| dc.relation.volume | 14 | |
| dc.source.identifier | https://www.utupub.fi/handle/10024/172607 | |
| dc.title | Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization | |
| dc.year.issued | 2019 |
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