Quantifying the calcification of abdominal aorta and major side branches with deep learning

dc.contributor.authorHalkoaho Johannes
dc.contributor.authorNiiranen Oskari
dc.contributor.authorSalli Eero
dc.contributor.authorKaseva Tuomas
dc.contributor.authorSavolainen Sauli
dc.contributor.authorKangasniemi Marko
dc.contributor.authorHakovirta Harri
dc.contributor.organizationfi=kirurgia|en=Surgery|
dc.contributor.organizationfi=tyks, vsshp|en=tyks, varha|
dc.contributor.organization-code1.2.246.10.2458963.20.97295082107
dc.converis.publication-id381275288
dc.converis.urlhttps://research.utu.fi/converis/portal/Publication/381275288
dc.date.accessioned2025-08-28T02:03:28Z
dc.date.available2025-08-28T02:03:28Z
dc.description.abstract<p><strong>Aim: </strong>To explore the possibility of a neural network-based method for quantifying calcifications of the abdominal aorta and its branches.</p><p><strong>Materials and methods: </strong>In total, 58 computed tomography (CT) angiography volumes were selected from a dataset of 609 to represent different stages of sclerosis. The ground truth segmentations of the abdominal aorta, coeliac trunk, superior mesenteric artery, renal arteries, common iliac arteries, and their calcifications were delineated manually. Two V-Net ensemble models were trained, one for segmenting arteries of interest and another for calcifications. The branches of interest were shortened algorithmically. The volumes of calcification were then evaluated from the arteries of interest.</p><p><strong>Results: </strong>The results indicate that automatic detection is possible with a high correlation to the ground truth. The scores for the ensemble calcification model were dice score of 0.69 and volumetric similarity (VS) of 0.80 and for the arteries of interest segmentations: aorta: dice 0.96, VS 0.98; aortic branches: dice 0.74, VS 0.87; and common iliac arteries: dice 0.72, VS 0.91.</p><p><strong>Conclusions: </strong>The presented neural network model is the first to be capable of automatically segmenting, in addition to calcification, both the aorta and its branches from contrast-enhanced CT angiography. This technology shows promise in addressing limitations inherent in earlier methods that relied solely on plain CT.</p>
dc.format.pagerangee665
dc.format.pagerangee674
dc.identifier.eissn1365-229X
dc.identifier.jour-issn0009-9260
dc.identifier.olddbid208515
dc.identifier.oldhandle10024/191542
dc.identifier.urihttps://www.utupub.fi/handle/11111/57945
dc.identifier.urlhttps://doi.org/10.1016/j.crad.2024.01.023
dc.identifier.urnURN:NBN:fi-fe2025082792022
dc.language.isoen
dc.okm.affiliatedauthorNiiranen, Oskari
dc.okm.affiliatedauthorHakovirta, Harri
dc.okm.affiliatedauthorDataimport, tyks, vsshp
dc.okm.discipline3121 Internal medicineen_GB
dc.okm.discipline3126 Surgery, anesthesiology, intensive care, radiologyen_GB
dc.okm.discipline3121 Sisätauditfi_FI
dc.okm.discipline3126 Kirurgia, anestesiologia, tehohoito, radiologiafi_FI
dc.okm.internationalcopublicationnot an international co-publication
dc.okm.internationalityInternational publication
dc.okm.typeA1 ScientificArticle
dc.publisherElsevier
dc.publisher.countryUnited Kingdomen_GB
dc.publisher.countryBritanniafi_FI
dc.publisher.country-codeGB
dc.relation.doi10.1016/j.crad.2024.01.023
dc.relation.ispartofjournalClinical Radiology
dc.relation.issue5
dc.relation.volume79
dc.source.identifierhttps://www.utupub.fi/handle/10024/191542
dc.titleQuantifying the calcification of abdominal aorta and major side branches with deep learning
dc.year.issued2024

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