A prognostic model for colorectal cancer based on CEA and a 48-multiplex serum biomarker panel

dc.contributor.authorBjörkman Kajsa
dc.contributor.authorJalkanen Sirpa
dc.contributor.authorSalmi Marko
dc.contributor.authorMustonen Harri
dc.contributor.authorKaprio Tuomas
dc.contributor.authorKekki Henna
dc.contributor.authorPettersson Kim
dc.contributor.authorBöckelman Camilla
dc.contributor.authorHaglund Caj
dc.contributor.organizationfi=MediCity|en=MediCity|
dc.contributor.organizationfi=biolääketieteen laitos|en=Institute of Biomedicine|
dc.contributor.organizationfi=biotekniikka|en=Biotechnology|
dc.contributor.organizationfi=bioteknologian laitos|en=Department of Life Technologies|
dc.contributor.organizationfi=tyks, vsshp|en=tyks, varha|
dc.contributor.organization-code1.2.246.10.2458963.20.66532595361
dc.contributor.organization-code1.2.246.10.2458963.20.77952289591
dc.contributor.organization-code1.2.246.10.2458963.20.98373201676
dc.converis.publication-id53697638
dc.converis.urlhttps://research.utu.fi/converis/portal/Publication/53697638
dc.date.accessioned2022-10-28T13:52:22Z
dc.date.available2022-10-28T13:52:22Z
dc.description.abstractMortality in colorectal cancer (CRC) remains high, resulting in 860,000 deaths annually. Carcinoembryonic antigen is widely used in clinics for CRC patient follow-up, despite carrying a limited prognostic value. Thus, an obvious need exists for multivariate prognostic models. We analyzed 48 biomarkers using a multiplex immunoassay panel in preoperative serum samples from 328 CRC patients who underwent surgery at Helsinki University Hospital between 1998 and 2003. We performed a multivariate prognostic forward-stepping background model based on basic clinicopathological data, and a multivariate machine-learned prognostic model based on clinicopathological data and biomarker variables, calculating the disease-free survival using the value of importance score. From the 48 analyzed biomarkers, only IL-8 emerged as a significant prognostic factor for CRC patients in univariate analysis (HR 4.88; 95% CI 2.00-11.92; p = 0.024) after correcting for multiple comparisons. We also developed a multivariate model based on all 48 biomarkers using a random survival forest analysis. Variable selection based on a minimal depth and the value of importance yielded two tentative candidate CRC prognostic markers: IL-2Ra and IL-8. A multivariate prognostic model using machine-learning technologies improves the prognostic assessment of survival among surgically treated CRC patients.
dc.identifier.jour-issn2045-2322
dc.identifier.olddbid184880
dc.identifier.oldhandle10024/167974
dc.identifier.urihttps://www.utupub.fi/handle/11111/51856
dc.identifier.urnURN:NBN:fi-fe2021042824005
dc.language.isoen
dc.okm.affiliatedauthorJalkanen, Sirpa
dc.okm.affiliatedauthorSalmi, Marko
dc.okm.affiliatedauthorKekki, Henna
dc.okm.affiliatedauthorPettersson, Kim
dc.okm.affiliatedauthorDataimport, MediCity
dc.okm.affiliatedauthorDataimport, tyks, vsshp
dc.okm.discipline3111 Biomedicineen_GB
dc.okm.discipline3122 Cancersen_GB
dc.okm.discipline318 Medical biotechnologyen_GB
dc.okm.discipline3111 Biolääketieteetfi_FI
dc.okm.discipline3122 Syöpätauditfi_FI
dc.okm.discipline318 Lääketieteen bioteknologiafi_FI
dc.okm.internationalcopublicationnot an international co-publication
dc.okm.internationalityInternational publication
dc.okm.typeA1 ScientificArticle
dc.publisherNATURE RESEARCH
dc.publisher.countryGermanyen_GB
dc.publisher.countrySaksafi_FI
dc.publisher.country-codeDE
dc.relation.articlenumberARTN 4287
dc.relation.doi10.1038/s41598-020-80785-1
dc.relation.ispartofjournalScientific Reports
dc.relation.issue1
dc.relation.volume11
dc.source.identifierhttps://www.utupub.fi/handle/10024/167974
dc.titleA prognostic model for colorectal cancer based on CEA and a 48-multiplex serum biomarker panel
dc.year.issued2021

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