A prognostic model for colorectal cancer based on CEA and a 48-multiplex serum biomarker panel
| dc.contributor.author | Björkman Kajsa | |
| dc.contributor.author | Jalkanen Sirpa | |
| dc.contributor.author | Salmi Marko | |
| dc.contributor.author | Mustonen Harri | |
| dc.contributor.author | Kaprio Tuomas | |
| dc.contributor.author | Kekki Henna | |
| dc.contributor.author | Pettersson Kim | |
| dc.contributor.author | Böckelman Camilla | |
| dc.contributor.author | Haglund Caj | |
| dc.contributor.organization | fi=MediCity|en=MediCity| | |
| dc.contributor.organization | fi=biolääketieteen laitos|en=Institute of Biomedicine| | |
| dc.contributor.organization | fi=biotekniikka|en=Biotechnology| | |
| dc.contributor.organization | fi=bioteknologian laitos|en=Department of Life Technologies| | |
| dc.contributor.organization | fi=tyks, vsshp|en=tyks, varha| | |
| dc.contributor.organization-code | 1.2.246.10.2458963.20.66532595361 | |
| dc.contributor.organization-code | 1.2.246.10.2458963.20.77952289591 | |
| dc.contributor.organization-code | 1.2.246.10.2458963.20.98373201676 | |
| dc.converis.publication-id | 53697638 | |
| dc.converis.url | https://research.utu.fi/converis/portal/Publication/53697638 | |
| dc.date.accessioned | 2022-10-28T13:52:22Z | |
| dc.date.available | 2022-10-28T13:52:22Z | |
| dc.description.abstract | Mortality in colorectal cancer (CRC) remains high, resulting in 860,000 deaths annually. Carcinoembryonic antigen is widely used in clinics for CRC patient follow-up, despite carrying a limited prognostic value. Thus, an obvious need exists for multivariate prognostic models. We analyzed 48 biomarkers using a multiplex immunoassay panel in preoperative serum samples from 328 CRC patients who underwent surgery at Helsinki University Hospital between 1998 and 2003. We performed a multivariate prognostic forward-stepping background model based on basic clinicopathological data, and a multivariate machine-learned prognostic model based on clinicopathological data and biomarker variables, calculating the disease-free survival using the value of importance score. From the 48 analyzed biomarkers, only IL-8 emerged as a significant prognostic factor for CRC patients in univariate analysis (HR 4.88; 95% CI 2.00-11.92; p = 0.024) after correcting for multiple comparisons. We also developed a multivariate model based on all 48 biomarkers using a random survival forest analysis. Variable selection based on a minimal depth and the value of importance yielded two tentative candidate CRC prognostic markers: IL-2Ra and IL-8. A multivariate prognostic model using machine-learning technologies improves the prognostic assessment of survival among surgically treated CRC patients. | |
| dc.identifier.jour-issn | 2045-2322 | |
| dc.identifier.olddbid | 184880 | |
| dc.identifier.oldhandle | 10024/167974 | |
| dc.identifier.uri | https://www.utupub.fi/handle/11111/51856 | |
| dc.identifier.urn | URN:NBN:fi-fe2021042824005 | |
| dc.language.iso | en | |
| dc.okm.affiliatedauthor | Jalkanen, Sirpa | |
| dc.okm.affiliatedauthor | Salmi, Marko | |
| dc.okm.affiliatedauthor | Kekki, Henna | |
| dc.okm.affiliatedauthor | Pettersson, Kim | |
| dc.okm.affiliatedauthor | Dataimport, MediCity | |
| dc.okm.affiliatedauthor | Dataimport, tyks, vsshp | |
| dc.okm.discipline | 3111 Biomedicine | en_GB |
| dc.okm.discipline | 3122 Cancers | en_GB |
| dc.okm.discipline | 318 Medical biotechnology | en_GB |
| dc.okm.discipline | 3111 Biolääketieteet | fi_FI |
| dc.okm.discipline | 3122 Syöpätaudit | fi_FI |
| dc.okm.discipline | 318 Lääketieteen bioteknologia | fi_FI |
| dc.okm.internationalcopublication | not an international co-publication | |
| dc.okm.internationality | International publication | |
| dc.okm.type | A1 ScientificArticle | |
| dc.publisher | NATURE RESEARCH | |
| dc.publisher.country | Germany | en_GB |
| dc.publisher.country | Saksa | fi_FI |
| dc.publisher.country-code | DE | |
| dc.relation.articlenumber | ARTN 4287 | |
| dc.relation.doi | 10.1038/s41598-020-80785-1 | |
| dc.relation.ispartofjournal | Scientific Reports | |
| dc.relation.issue | 1 | |
| dc.relation.volume | 11 | |
| dc.source.identifier | https://www.utupub.fi/handle/10024/167974 | |
| dc.title | A prognostic model for colorectal cancer based on CEA and a 48-multiplex serum biomarker panel | |
| dc.year.issued | 2021 |
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