A molecular-based identification resource for the arthropods of Finland

dc.contributor.authorRoslin Tomas
dc.contributor.authorSomervuo Panu
dc.contributor.authorPentinsaari Mikko
dc.contributor.authorHebert Paul D. N.
dc.contributor.authorAgda Jireh
dc.contributor.authorAhlroth Petri
dc.contributor.authorAnttonen Perttu
dc.contributor.authorAspi Jouni
dc.contributor.authorBlagoev Gergin
dc.contributor.authorBlanco Santiago
dc.contributor.authorChan Dean
dc.contributor.authorClayhills Tom
dc.contributor.authordeWaard Jeremy
dc.contributor.authordeWaard Stephanie
dc.contributor.authorElliot Tyler
dc.contributor.authorElo Riikka
dc.contributor.authorHaapala Sami
dc.contributor.authorHelve Eero
dc.contributor.authorIlmonen Jari
dc.contributor.authorHirvonen Petri
dc.contributor.authorHo Chris
dc.contributor.authorItämies Juhani
dc.contributor.authorIvanov Vladislav
dc.contributor.authorJakovlev Jevgeni
dc.contributor.authorJuslén Aino
dc.contributor.authorJussila Reijo
dc.contributor.authorKahanpää Jere
dc.contributor.authorKaila Lauri
dc.contributor.authorKaitila Jari-Pekka
dc.contributor.authorKakko Ari
dc.contributor.authorKakko Iiro
dc.contributor.authorKarhu Ali
dc.contributor.authorKarjalainen Sami
dc.contributor.authorKjaerandsen Jostein
dc.contributor.authorKoskinen Janne
dc.contributor.authorLaasonen Erkki M.
dc.contributor.authorLaasonen Leena
dc.contributor.authorLaine Erkka
dc.contributor.authorLampila Petri
dc.contributor.authorLevesque-Beaudin Valerie
dc.contributor.authorLu Liuqiong
dc.contributor.authorLähteenaro Meri
dc.contributor.authorMajuri Pekka
dc.contributor.authorMalmberg Sampsa
dc.contributor.authorManjunath Ramya
dc.contributor.authorMartikainen Petri
dc.contributor.authorMattila Jaakko
dc.contributor.authorMcKeown Jaclyn
dc.contributor.authorMetsälä Petri
dc.contributor.authorMiklasevskaja Margarita
dc.contributor.authorMiller Meredith
dc.contributor.authorMiskie Renee
dc.contributor.authorMuinonen Arto
dc.contributor.authorMukkala Veli-Matti
dc.contributor.authorNaik Suresh
dc.contributor.authorNikolova Nadia
dc.contributor.authorNupponen Kari
dc.contributor.authorOvaskainen Otso
dc.contributor.authorÖsterblad Ika
dc.contributor.authorPaasivirta Lauri
dc.contributor.authorPajunen Timo
dc.contributor.authorParkko Petri
dc.contributor.authorPaukkunen Juho
dc.contributor.authorPenttinen Ritva
dc.contributor.authorPerez Kate
dc.contributor.authorPohjoismäki Jaakko
dc.contributor.authorProsser Sean
dc.contributor.authorRaekunnas Martti
dc.contributor.authorRahulan Miduna
dc.contributor.authorRannisto Meeri
dc.contributor.authorRatnasingham Sujeevan
dc.contributor.authorRaukko Pekka
dc.contributor.authorRinne Aki
dc.contributor.authorRintala Teemu
dc.contributor.authorRomo Susana Miranda
dc.contributor.authorSalmela Jukka
dc.contributor.authorSalokannel Juha
dc.contributor.authorSavolainen Riitta
dc.contributor.authorSchulman Leif
dc.contributor.authorSihvonen Pasi
dc.contributor.authorSoliman Dina
dc.contributor.authorSones Jayme
dc.contributor.authorSteinke Claudia
dc.contributor.authorStåhls Gunilla
dc.contributor.authorTabell Jukka
dc.contributor.authorTiusanen Mikko
dc.contributor.authorVárkonyi Gergely
dc.contributor.authorVesterinen Eero J.
dc.contributor.authorViitanen Esko
dc.contributor.authorVikberg Veli
dc.contributor.authorViitasaari Matti
dc.contributor.authorVilen Jussi
dc.contributor.authorWarne Connor
dc.contributor.authorWei Catherine
dc.contributor.authorWinqvist Kaj
dc.contributor.authorZakharov Evgeny
dc.contributor.authorMutanen Marko
dc.contributor.organizationfi=Turun yliopiston biodiversiteettiyksikkö|en=Biodiversity Unit of the University of Turku|
dc.contributor.organizationfi=fysiologia ja genetiikka|en=Physiology and Genetics|
dc.contributor.organization-code1.2.246.10.2458963.20.70712835001
dc.contributor.organization-code1.2.246.10.2458963.20.85536774202
dc.contributor.organization-code2606010
dc.converis.publication-id68050159
dc.converis.urlhttps://research.utu.fi/converis/portal/Publication/68050159
dc.date.accessioned2022-10-28T13:53:07Z
dc.date.available2022-10-28T13:53:07Z
dc.description.abstract<p><br></p><p>To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the improvement in identification accuracy enabled by the current reference library, we ran 1000 Finnish insect and spider species through the Barcode of Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned to a unique species when compared to the new reference library alone, 85% were correctly identified when compared to BOLD with the new material included, and 75% with the new material excluded. To capitalize on this resource, we used the new reference material to train a probabilistic taxonomic assignment tool, FinPROTAX, scoring high success. For the full-length barcode region, the accuracy of taxonomic assignments at the level of classes, orders, families, subfamilies, tribes, genera, and species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively. The FinBOL arthropod reference library and FinPROTAX are available through the Finnish Biodiversity Information Facility (www.laji.fi) at https://laji.fi/en/theme/protax. Overall, the FinBOL investment represents a massive capacity-transfer from the taxonomic community of Finland to all sectors of society.</p>
dc.format.pagerange803
dc.format.pagerange822
dc.identifier.eissn1755-0998
dc.identifier.jour-issn1755-098X
dc.identifier.olddbid184962
dc.identifier.oldhandle10024/168056
dc.identifier.urihttps://www.utupub.fi/handle/11111/52022
dc.identifier.urnURN:NBN:fi-fe2022012710935
dc.language.isoen
dc.okm.affiliatedauthorElo, Riikka
dc.okm.affiliatedauthorPenttinen, Ritva
dc.okm.affiliatedauthorVesterinen, Eero
dc.okm.affiliatedauthorWinqvist, Kaj
dc.okm.discipline1181 Ecology, evolutionary biologyen_GB
dc.okm.discipline1181 Ekologia, evoluutiobiologiafi_FI
dc.okm.internationalcopublicationinternational co-publication
dc.okm.internationalityInternational publication
dc.okm.typeA1 ScientificArticle
dc.publisherWiley-Blackwell Publishing Ltd.
dc.publisher.countryUnited Kingdomen_GB
dc.publisher.countryBritanniafi_FI
dc.publisher.country-codeGB
dc.relation.doi10.1111/1755-0998.13510
dc.relation.ispartofjournalMolecular Ecology Resources
dc.relation.issue2
dc.relation.volume22
dc.source.identifierhttps://www.utupub.fi/handle/10024/168056
dc.titleA molecular-based identification resource for the arthropods of Finland
dc.year.issued2022

Tiedostot

Näytetään 1 - 1 / 1
Ladataan...
Name:
1755-0998.13510.pdf
Size:
2.5 MB
Format:
Adobe Portable Document Format
Description:
Publisher's PDF