TurkuNLP Entry for Interactive Bio-ID Assignment

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dc.contributor.authorSuwisa Kaewphan
dc.contributor.authorFarrokh Mehryary
dc.contributor.authorKai Hakala
dc.contributor.authorTapio Salakoski
dc.contributor.authorFilip Ginter
dc.contributor.organizationfi=kieli- ja puheteknologia|en=Language and Speech Technology|
dc.contributor.organizationfi=tietojenkäsittelytiede|en=Computer Science|
dc.contributor.organization-code1.2.246.10.2458963.20.47465613983
dc.contributor.organization-code2606803
dc.contributor.organization-code2606805
dc.converis.publication-id28249832
dc.converis.urlhttps://research.utu.fi/converis/portal/Publication/28249832
dc.date.accessioned2025-08-27T21:28:29Z
dc.date.available2025-08-27T21:28:29Z
dc.description.abstract<p>We participate in BioCreative VI: Interactive Bio-ID Assignment (Bio-ID) track by developing systems capable of named entity recognition and normalization of 6 entity types, namely Protein, Cell, Organism, Tissue, Molecule and Cellular. Our named entity recognition system is based on conditional random fields. For named entity normalization, we apply fuzzy matching and rule-based system to disambiguate and assign unique identifiers to the entities. The official evaluation shows that average F1-scores of all entity types for our recognition and normalization systems on strict span offsets are 0.720 and 0.668, respectively.</p>
dc.format.pagerange32
dc.format.pagerange35
dc.identifier.isbn978-84-948397-0-2
dc.identifier.olddbid200455
dc.identifier.oldhandle10024/183482
dc.identifier.urihttps://www.utupub.fi/handle/11111/46615
dc.identifier.urlhttp://www.biocreative.org/resources/publications/bcvi-proceedings/
dc.identifier.urnURN:NBN:fi-fe2021042717820
dc.language.isoen
dc.okm.affiliatedauthorKaewphan, Suwisa
dc.okm.affiliatedauthorMehryary, Farrokh
dc.okm.affiliatedauthorHakala, Kai
dc.okm.affiliatedauthorSalakoski, Tapio
dc.okm.affiliatedauthorGinter, Filip
dc.okm.discipline113 Computer and information sciencesen_GB
dc.okm.discipline113 Tietojenkäsittely ja informaatiotieteetfi_FI
dc.okm.internationalcopublicationnot an international co-publication
dc.okm.internationalityInternational publication
dc.okm.typeA4 Conference Article
dc.publisher.countryUnited Statesen_GB
dc.publisher.countryYhdysvallat (USA)fi_FI
dc.publisher.country-codeUS
dc.relation.conferenceBioCreative
dc.source.identifierhttps://www.utupub.fi/handle/10024/183482
dc.titleTurkuNLP Entry for Interactive Bio-ID Assignment
dc.title.bookProceedings of the BioCreative VI Workshop
dc.year.issued2018

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